regionAggregation,DsNOMe-method | R Documentation |
Aggregate methylation levels and coverage values accross a set of regions
## S4 method for signature 'DsNOMe'
regionAggregation(
.object,
regGr,
type,
methAggrFun = "weightedMean",
dropEmpty = TRUE
)
.object |
|
regGr |
|
type |
character string specifying a name for the region type |
methAggrFun |
aggregation function for methylation levels.
Currently |
dropEmpty |
discard all regions with no observed methylation levels |
Coverage values are aggregated by summing up coverage values for individual GCs
while the aggregation function for methylation levels is specified by the
methAggrFun
parameter.
a new DsNOMe
object with aggregated regions
Fabian Mueller
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