regionSetCounts-DsATAC-method: regionSetCounts-methods
In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R
regionSetCounts,DsATAC-method R Documentation
regionSetCounts-methods
Description
Overlap the insertion data with a list of region sets
Usage
## S4 method for signature 'DsATAC'
regionSetCounts(.object, rsl, bySample = FALSE)
Arguments
.object
DsATAC object
rsl
GRangesList or NAMED list of GRanges objects. Each element corresponds to a region set for which the summary statistics are reported
bySample
for internal use: iterate over samples (instead of retrieving one giant insertion list for all samples) in order to save memory (at the tradeoff of compute time)
Value
a matrix of overlap counts for each region set and sample
Author(s)
Fabian Mueller
GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| regionSetCounts,DsATAC-method | R Documentation |
regionSetCounts-methods
Description
Overlap the insertion data with a list of region sets
Usage
## S4 method for signature 'DsATAC'
regionSetCounts(.object, rsl, bySample = FALSE)
Arguments
.object |
|
rsl |
|
bySample |
for internal use: iterate over samples (instead of retrieving one giant insertion list for all samples) in order to save memory (at the tradeoff of compute time) |
Value
a matrix of overlap counts for each region set and sample
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.