run_atac_exploratory: run_atac_exploratory

In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R

run_atac_exploratory

Description

Run exploratory analyses for ATAC-seq data

Usage

run_atac_exploratory(
  dsa,
  anaDir,
  chromVarObj = NULL,
  itLsiObj = NULL,
  geneActSe = NULL
)

Arguments

dsa	DsATAC object
anaDir	analysis directory
chromVarObj	[optional] pre-computed result of a call to run_atac_chromvar(...)
itLsiObj	[for single-cell only; optional] pre-computed result of a call to iterativeLSI(.object, ...)
geneActSe	[for single-cell only; optional] pre-computed result of a call to getCiceroGeneActivities(.object, ...)

Value

S3 object containing exploratory metrics and an analysis report object

Author(s)

Fabian Mueller

GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.