samplePseudoBulk,DsATACsc-method | R Documentation |
Samples pseudo-bulk samples from single-cells
## S4 method for signature 'DsATACsc'
samplePseudoBulk(.object, nnData, nSamples, nCellsPerSample = 100)
.object |
|
nnData |
Data to use for nearest neighbor matching. Can either be the
name of a region type in |
nSamples |
number of pseudobulk samples to be returned |
nCellsPerSample |
number of cells to be aggregated per sample |
Samples pseudo-bulk samples from single-cells by sampling nSamples
individual cells
and then merging it with its nCellsPerSample - 1
nearest neighbors (according to nnData
).
S3
data structure containing a list of sampling results as well as
a DsATAC
object containing pseudo-bulk aggregates
Fabian Mueller
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