unsupervisedAnalysisSc,DsATACsc-method | R Documentation |
Perform unsupervised analysis on single-cell data. Performs dimensionality reduction and clustering.
## S4 method for signature 'DsATACsc'
unsupervisedAnalysisSc(
.object,
regionType,
regionIdx = NULL,
dimRedMethod = "tf-idf_irlba",
usePcs = 1:50,
clusteringMethod = "seurat_louvain"
)
.object |
|
regionType |
character string specifying the region type |
regionIdx |
indices of regions to be used (logical or integer vector). If |
dimRedMethod |
character string specifying the dimensionality reduction method. Currently on |
usePcs |
integer vector specifying the principal components to use for UMAP and clustering |
clusteringMethod |
character string specifying the clustering method. Currently on |
an S3
object containing dimensionality reduction results and clustering
Fabian Mueller
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