BatchEffect_Combat: BatchEffect_Combat function
In GregoireCoppens/LICMEpigenetics: Processing of Epigenetic data

BatchEffect_Combat

R Documentation

BatchEffect_Combat function

Function to do a batch correction using combat on the beta set from the epigenetic set.

BatchEffect_Combat(x, batch, RiskFactors, M = FALSE, save = TRUE)

`x`	Epigenetic set object.
`batch`	Non-biological factor for which the beta set needs to be corrected.
`RiskFactors`	Risk factors for which the Combat algorithm needs to correct
`M`	If TRUE, the combat will run using the M values instead of the beta values.
`save`	If TRUE, the new bset will be saved into the minfi_sets directory.