ProbeNormalisation: ProbeNormalisation function

In GregoireCoppens/LICMEpigenetics: Processing of Epigenetic data

ProbeNormalisation function

Description

Functional or Quantile Normalisation of the CpG probes.

Usage

ProbeNormalisation(x, method = "funnorm", nPCs = 3, save = FALSE, verbose = 0)

Arguments

x	Epigenetic set object.
method	Type of normalisation algorithm. Options: funnorm, quantile, raw.
nPCs	Number of principal components that funnorm uses.
save	If TRUE, the methylset will be saved to the "minfi_sets" sub-directory.
verbose	When set to 1 or higher more messages will be shown.

Value

Updated Epigenetic set object.

GregoireCoppens/LICMEpigenetics documentation built on April 24, 2023, 10:02 a.m.