Make_RGset: Make_RGset function

In GregoireCoppens/LICMEpigenetics: Processing of Epigenetic data

Make_RGset function

Description

This function builds a red-green set (rgset) from the given idat files. The filenames from the idat files will be as unique identifiers.

Usage

Make_RGset(
  idat_paths = "./",
  name = "",
  subselect = "",
  test = FALSE,
  n_testsamples = 5,
  save = FALSE,
  verbose = FALSE
)

Arguments

idat_paths	Path to the idat files
name	Project name (this name will be in all the following filenames as a unique identifier for the project).
subselect	Select only the idat files that have a given string in their filenames.
test	Make a smaller set that can be used to test all the functions.
n_testsamples	The number of samples in a test set (if test = TRUE). Default: 5.
save	Set to TRUE if you want to save the rgset as an .Rdata file.
verbose	When set to 1 or higher more messages will be shown.

Value

Epigenetic set object.

GregoireCoppens/LICMEpigenetics documentation built on April 24, 2023, 10:02 a.m.