RemoveBadSamples: RemoveBadSamples function

In GregoireCoppens/LICMEpigenetics: Processing of Epigenetic data

RemoveBadSamples function

Description

Function to remove bad samples from an epigenetic set. This function also outputs a pdf with density plots highlighting the removed samples and without the bad samples.

Usage

RemoveBadSamples(
  x,
  badSamplesNames = c(),
  badSamplesNum = c(),
  Swabname_position = 3
)

Arguments

x	Epigenetic set object.
badSamplesNames	Filenames from bad samples
badSamplesNum	Index numbers from bad samples.
Swabname_position	Position of swabname in the filename (separated by "_")

Value

Updated Epigenetic set object.

GregoireCoppens/LICMEpigenetics documentation built on April 24, 2023, 10:02 a.m.