FindBadSamples: FindBadSamples function

In GregoireCoppens/LICMEpigenetics: Processing of Epigenetic data

FindBadSamples function

Description

Function to visually find bad samples with non-bimodal distributions using density plots.

Usage

FindBadSamples(
  x,
  badSamples = c(),
  n = 4,
  ylim = c(0, 5),
  Swabname_position = 3
)

Arguments

x	Epigenetic set object.
badSamples	Number or filenames of the bad idat files.
n	number of density plots per plot. Max 4 is suggested.
ylim	range of the y-axis
Swabname_position	Position of swabname in the filename (separated by "_")

Value

Updated Epigenetic set object.

GregoireCoppens/LICMEpigenetics documentation built on April 24, 2023, 10:02 a.m.