ProbeExclusion: ProbeExclusion function

In GregoireCoppens/LICMEpigenetics: Processing of Epigenetic data

ProbeExclusion function

Description

Removes probes on SNPS, Sex chromosomes or that do not differ from the background noise.

Usage

ProbeExclusion(
  x,
  snps = c("CpG", "SBE"),
  sex = TRUE,
  background = TRUE,
  ExportExcludedProbes = FALSE,
  delay = FALSE
)

Arguments

x	Epigenetic set object.
snps	Which SNPs position should considered when excluding probes on SNPs.
sex	If TRUE, probes on the sex chromosomes are excluded.
background	If TRUE, a background check will be completed and those probes which signals do not differ from the background noise, will be removed.
ExportExcludedProbes	if TRUE, the locations of all the removed probes will be saved in the Epigenetic set and exported to a '.csv' file
delay	If TRUE, the excluded probes will be saved, but not yet excluded.

Value

Updated Epigenetic set object.

GregoireCoppens/LICMEpigenetics documentation built on April 24, 2023, 10:02 a.m.