BatchEffect_PointPlot: BatchEffect_PointPlot Function

In GregoireCoppens/LICMEpigenetics: Processing of Epigenetic data

BatchEffect_PointPlot Function

Description

Make point plots from the first 3 principal components from the beta set to assess whether batch effect is present. Every Plot should only contain maximum 6 groups to maintain an overview.

Usage

BatchEffect_PointPlot(
  x,
  batch,
  n = 6,
  xlim = c(-1000, 2500),
  ylim = c(-1000, 1000)
)

Arguments

x	Epigenetic set object.
batch	The non-biological factor which we want to investigate for batch effect.
n	Number of samples per plot. It is advised to not exceed 6 groups per plot.
xlim	range of the x-axis
ylim	range of the y-axis

Value

Updated Epigenetic set object.

GregoireCoppens/LICMEpigenetics documentation built on April 24, 2023, 10:02 a.m.