Files in Guilz/rfret

Analyze FRET Binding Data

.Rbuildignore

.gitignore

.lintr

.travis.yml

CONTRIBUTING.md

DESCRIPTION

LICENSE

LICENSE.txt

NAMESPACE

R/datasets.R R/equations.R R/fit_binding_model.R R/format_data.R R/fp_average_replicates.R R/fp_calculate_pola_aniso_int.R R/fp_use_signal.R R/fret_average_replicates.R R/fret_correct_signal.R R/fret_job_plot.R R/get_user_metadata.R R/guess_parameters.R R/inspect_raw_data.R R/inspection_plots_saving_functions.R R/load_data.R R/make_figure.R R/on_attach.R R/plan_experiment.R R/pre_processing_functions.R R/raw_data_inspection_functions.R R/rfret-package.R

R/sysdata.rda

README.md

_pkgdown.yml

binding-curve.png

data-raw/default_metadata.json

data-raw/fp_binding_data.csv

data-raw/fret_binding_data.csv

data-raw/make_default_metadata.R data-raw/make_example_datasets.R data-raw/make_lintr_config.R

data/fp_binding_data.rda

data/fret_binding_data.rda

docs/LICENSE.html

docs/articles/analyzing_fret_data.html

docs/articles/analyzing_fret_data_files/figure-html/Figure making-1.png

docs/articles/analyzing_fret_data_files/figure-html/Inspect raw data-1.png

docs/articles/analyzing_fret_data_files/figure-html/Inspect raw data-2.png

docs/articles/analyzing_fret_data_files/figure-html/Inspect raw data-3.png

docs/articles/hyperbolic_model_equation.html

docs/articles/index.html

docs/articles/quadratic_model_equation.html

docs/articles/setting_up_fret_experiment.html

docs/authors.html

docs/index.html

docs/jquery.sticky-kit.min.js

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/reference/detect_binding_model.html

docs/reference/fit_binding_model.html

docs/reference/fit_hill.html

docs/reference/fit_hyperbolic.html

docs/reference/fit_quadratic.html

docs/reference/fp_average_replicates.html

docs/reference/fp_binding_data.html

docs/reference/fp_calculate_pola_aniso_int.html

docs/reference/fp_calculate_polarization_anisotropy.html

docs/reference/fp_format_data.html

docs/reference/fp_format_one_dataset.html

docs/reference/fp_inspect_one_dataset.html

docs/reference/fp_inspect_raw_data.html

docs/reference/fp_save_inspection_plot.html

docs/reference/fp_use_signal.html

docs/reference/fret_average_replicates.html

docs/reference/fret_binding_data.html

docs/reference/fret_correct_one_dataset.html

docs/reference/fret_correct_signal.html

docs/reference/fret_format_data.html

docs/reference/fret_format_one_dataset.html

docs/reference/fret_inspect_one_dataset.html

docs/reference/fret_inspect_raw_data.html

docs/reference/fret_job_plot.html

docs/reference/fret_save_inspection_plots.html

docs/reference/get_user_metadata.html

docs/reference/guess_parameters.html

docs/reference/hill.html

docs/reference/hyperbolic.html

docs/reference/index.html

docs/reference/load_data.html

docs/reference/make_figure.html

docs/reference/make_one_figure.html

docs/reference/plan_experiment.html

docs/reference/quadratic.html

docs/reference/read_files.html

docs/reference/rfret.html

man/detect_binding_model.Rd man/dot-onAttach.Rd man/fit_binding_model.Rd man/fit_hill.Rd man/fit_hyperbolic.Rd man/fit_quadratic.Rd man/format_data.Rd man/fp_average_replicates.Rd man/fp_binding_data.Rd man/fp_calculate_pola_aniso_int.Rd man/fp_format_one_dataset.Rd man/fp_inspect_one_dataset.Rd man/fp_save_inspection_plot.Rd man/fp_use_signal.Rd man/fret_average_replicates.Rd man/fret_binding_data.Rd man/fret_correct_one_dataset.Rd man/fret_correct_signal.Rd man/fret_format_one_dataset.Rd man/fret_inspect_one_dataset.Rd man/fret_job_plot.Rd man/fret_save_inspection_plots.Rd man/get_user_metadata.Rd man/guess_parameters.Rd man/hill.Rd man/hyperbolic.Rd man/inspect_raw_data.Rd man/load_data.Rd man/make_figure.Rd man/make_one_figure.Rd man/plan_experiment.Rd man/quadratic.Rd man/read_files.Rd man/rfret.Rd

rfret.Rproj

tests/testthat.R

tests/testthat/fp/fp_binding_data_averaged.csv

tests/testthat/fp/fp_binding_data_formatted.csv

tests/testthat/fp/fp_expected_fits.rda

tests/testthat/fret/fret_binding_data_averaged.csv

tests/testthat/fret/fret_binding_data_corrected.csv

tests/testthat/fret/fret_binding_data_formatted.csv

tests/testthat/fret/fret_expected_fits.rda

tests/testthat/fret/fret_less_acceptor_controls.csv

tests/testthat/fret/fret_less_acceptor_controls_corrected.csv

tests/testthat/fret/fret_less_donor_controls.csv

tests/testthat/fret/fret_less_donor_controls_corrected.csv

tests/testthat/metadata/expected_output.csv

tests/testthat/metadata/fret_dataset_blah.csv

tests/testthat/metadata/metadata_blah.json

tests/testthat/test_01_metadata.R tests/testthat/test_02_formatting.R tests/testthat/test_fp_02_averaging.R tests/testthat/test_fret_02_averaging.R tests/testthat/test_fret_03_correction.R tests/testthat/test_z_fit_equations.R tests/testthat/test_zz_lints.R vignettes/analyzing_fret_data.Rmd vignettes/hyperbolic_model_equation.Rmd vignettes/quadratic_model_equation.Rmd vignettes/setting_up_fret_experiment.Rmd

Guilz/rfret documentation built on Oct. 18, 2021, 2:14 p.m.