cds2aa: Translate CDS file to Amino Acids file
In HajkD/orthologr: Comparative Genomics with R
cds2aa R Documentation
Translate CDS file to Amino Acids file
Description
This function takes a data.table object as input and
translates the cds sequences stored as seqs column into the corresponding amino acid
sequence.
Usage
cds2aa(dt, delete_corrupt_cds = TRUE)
Arguments
dt
a data.table object storing cds sequences in a column named seqs.
delete_corrupt_cds
a logical value indicating whether sequences with corrupt base triplets should be removed from the input file. This is the case when the length of coding sequences cannot be divided by 3 and thus the coding sequence contains at least one corrupt base triplet.
HajkD/orthologr documentation built on Oct. 13, 2023, 12:11 a.m.
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| cds2aa | R Documentation |
Translate CDS file to Amino Acids file
Description
This function takes a data.table object as input and
translates the cds sequences stored as seqs column into the corresponding amino acid
sequence.
Usage
cds2aa(dt, delete_corrupt_cds = TRUE)
Arguments
dt |
a |
delete_corrupt_cds |
a logical value indicating whether sequences with corrupt base triplets should be removed from the input |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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