read.genome | R Documentation |
This function reads an organism specific genome stored in a defined file format.
read.genome(file, format, ...)
file |
a character string specifying the path to the file storing the genome. |
format |
a character string specifying the file format used to store the genome, e.g. "fasta", "fastq". |
... |
additional arguments that are used by the |
The read.genome
function takes a string specifying the path to the genome file
of interest as first argument.
It is possible to read in different genome file standards such as fasta or fastq. Genomes stored in fasta files can be downloaded from http://ensemblgenomes.org/info/genomes.
A data.table storing the gene id in the first column and the corresponding sequence as string in the second column.
Hajk-Georg Drost and Sarah Scharfenberg
## Not run:
# reading a genome stored in a fasta file
Ath.genome <- read.genome(system.file('seqs/ortho_thal_cds.fasta', package = 'orthologr'),
format = "fasta")
## End(Not run)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.