retrieve_core_orthologs: Retrieve a core set of orthologous gene loci from several...

View source: R/retrieve_core_orthologs.R

retrieve_core_orthologsR Documentation

Retrieve a core set of orthologous gene loci from several pairwise ortholog tables

Description

Given a ortho table generated with generate_ortholog_tables_all, this function will determine a core set of orthologs that are shared between all species.

Usage

retrieve_core_orthologs(ortho_tables, species_order)

Arguments

ortho_tables

a ortho tables that was generated with generate_ortholog_tables_all.

species_order

a character string specifying species names listed in the order of phylogenetic/taxonomic distance from the query species. The species names must match with the species names present in the ortho_tables.

Author(s)

Hajk-Georg Drost


HajkD/orthologr documentation built on Oct. 13, 2023, 12:11 a.m.