retrieve_core_orthologs: Retrieve a core set of orthologous gene loci from several...
In HajkD/orthologr: Comparative Genomics with R

View source: R/retrieve_core_orthologs.R

retrieve_core_orthologs

R Documentation

Retrieve a core set of orthologous gene loci from several pairwise ortholog tables

Description

Given a ortho table generated with generate_ortholog_tables_all, this function will determine a core set of orthologs that are shared between all species.

Usage

retrieve_core_orthologs(ortho_tables, species_order)

Arguments

`ortho_tables`	a `ortho tables` that was generated with `generate_ortholog_tables_all`.
`species_order`	a character string specifying species names listed in the order of phylogenetic/taxonomic distance from the query species. The species names must match with the species names present in the `ortho_tables`.