View source: R/plot_pairwise_orthologs.R
plot_pairwise_orthologs | R Documentation |
generate_ortholog_tables_all
Given a ortho table generated with generate_ortholog_tables_all
,
this function will visualize the number of pairwise orthologs inferred between a reference species A vs a set of subject species B_1, B_2, ...,B_N.
plot_pairwise_orthologs(
ortho_tables,
species_order,
xlab = "Subject Species",
ylab = "Number of reciprocal best hit orthologs",
title = "",
n_core_orthologs = NULL
)
ortho_tables |
a |
species_order |
a character string specifying species names listed in the order of phylogenetic/taxonomic distance from the query species.
The species names must match with the species names present in the |
xlab |
x-axis label. |
ylab |
y-axis label. |
title |
plot title. |
n_core_orthologs |
number of core orthologs within the |
Hajk-Georg Drost
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