API for HajkD/orthologr
Comparative Genomics with R

Global functions
Different Source code
NotAGap Source code
NumDiffs Source code
OF2Orthologs Source code
TranslateCodon Source code
TsTv Source code
Universal Source code
ambigousNucleotides Source code
blast Man page Source code
blast_best Man page Source code
blast_rec Man page Source code
cds2aa Man page Source code
clean_all_folders Man page Source code
codonPrecondition Source code
codon_aln Man page Source code
compute_dnds Man page Source code
dNdS Man page Source code
divergence_map Man page Source code
divergence_stratigraphy Man page Source code
extract_features Man page Source code
filter_best_hits Man page Source code
filter_core_set Man page Source code
filter_core_set_lnc Man page Source code
filter_dNdS Man page Source code
generate_ortholog_tables Man page Source code
generate_ortholog_tables_all Man page Source code
gestimator Source code
get_filename Source code
import_ortholog_tables_all Man page Source code
intToNuc Source code
is.alignment_search_tool Source code
is.codon_aln_tool Source code
is.dnaSequence Source code
is.dnds_est_method Source code
is.multiple_aln_tool Source code
is.ortho_detection_method Source code
is.pairwise_aln_tool Source code
is_installed_blast Source code
is_installed_clustalo Source code
is_installed_clustalw Source code
is_installed_kaks_calculator Source code
is_installed_mafft Source code
is_installed_muscle Source code
is_installed_orthofinder Source code
lnc_map_core_orthologs Man page Source code
lnc_map_counts Man page Source code
map_generator_dnds Man page Source code
map_generator_lnc Man page Source code
multi_aln Man page Source code
nucToInt Source code
orthofinder2 Man page Source code
orthofinder2_retrieve_core_orthologs Man page Source code
orthologs Man page Source code
orthologs_lnc Man page Source code
pairwise_aln Man page Source code
plot_diverse_homology_thresholds Man page Source code
plot_diverse_homology_thresholds_core_orthologs Man page Source code
plot_pairwise_orthologs Man page Source code
read.cds Man page Source code
read.dnds.tbl Man page Source code
read.genome Man page Source code
read.ortholog.table Source code
read.proteome Man page Source code
retrieve_core_orthologs Man page Source code
retrieve_longest_isoforms Man page Source code
retrieve_longest_isoforms_all Man page Source code
select_orthologs Man page Source code
set_blast Man page Source code
set_path Source code
substitutionrate Man page Source code
test Source code
testCoreOrthoParamsGeneLocus Man page Source code
testCoreOrthoParamsSpliceVariant Man page Source code
toChar Source code
transl Man page Source code
translate_cds_to_protein Man page Source code
translate_cds_to_protein_all Man page Source code
write.proteome Man page Source code
ws_wrap Source code
HajkD/orthologr documentation built on Nov. 6, 2019, 10:55 a.m.