lnc_map_counts: Count number of orthologous lncRNAs per pairwise species...
In HajkD/orthologr: Comparative Genomics with R

lnc_map_counts

R Documentation

Count number of orthologous lncRNAs per pairwise species comparison

Description

This function takes a orthologous lncRNA map generated with map_generator_lnc as input and groups the table by species to count the number of orthologous lncRNAs per pairwise species comparison using the reference (query) species specified in map_generator_lnc.

Usage

lnc_map_counts(lnc_map, species_order)

Arguments

`lnc_map`	a orthologous lncRNA map generated with `map_generator_lnc`.
`species_order`	character string specifying species names listed in the order of phylogenetic/taxonomic distance from the query species. The species names must match with the species names present in `map_generator_lnc`.