lnc_map_core_orthologs: Retrieve a core set of orthologous lncRNAs from the pairwise...
In HajkD/orthologr: Comparative Genomics with R

lnc_map_core_orthologs

R Documentation

Retrieve a core set of orthologous lncRNAs from the pairwise lncRNA orthologs map

Description

Given a lnc_map table generated with map_generator_lnc, this function will determine a core set of lncRNA orthologs that are shared between all species.

Usage

lnc_map_core_orthologs(lnc_map, species_order)

Arguments

`lnc_map`	a `lnc_map` that was generated with `map_generator_lnc`.
`species_order`	a character string specifying species names listed in the order of phylogenetic/taxonomic distance from the query species. The species names must match with the species names present in the `lnc_map`.