Man pages for HaojiaWu/plot1cell
A package for single cell data visualization
| add_track | Add tracks to the circlize plot |
| cell_order | Order the cells from each cluster |
| change_strip_background | A function to change the strip background color in ggplot |
| complex_dotplot_multiple | Plot multiple genes across groups |
| complex_dotplot_single | Plot single gene across groups |
| complex_featureplot | Plot gene expression on umap |
| complex_heatmap_unique | Plot gene expression across groups using ComplexHeatmap |
| complex_upset_plot | UpSet plot visualize the number of unique and shared DEGs... |
| complex_vlnplot_multiple | Violin plot for multiple genes across groups |
| complex_vlnplot_single | Violin plot for a single gene across groups |
| convert_geneid | A function to convert ensembl ID to gene name |
| creat_cellphonedb_file | Generate the files required by CellPhoneDB |
| create_pyscenic_file | Generate the files required by pySCENIC |
| data_processing | A function to process the h5 file from CellBender and... |
| extract_gene_count | A function to extract gene counts for ploting |
| firstup | A function to make gene name first letter capital |
| get_metadata | Get metadata from a Seurat object |
| get_segment | Create a segment for each element in a group |
| Install.example | A function to generate an example dataset for demo |
| mk_color_table | Create a dataframe for color mapping |
| mk_marker_ct | Make count matrix for the selected markers |
| order_gene_down | A function to order genes downregulated from the first to the... |
| order_gene_up | A function to order genes upregulated from the first to the... |
| plot_cell_fraction | Plot cell fractions across groups |
| plot_circlize | Generate a circlize plot outside the tSNE/UMAP |
| plot_qpcr | Plot the qPCR results |
| prepare_circlize_data | Prepare circlize data for plotting |
| run_correlation | Compute and plot correlations between two datasets |
| transform_coordinates | Convert coordinates |
