complex_upset_plot: UpSet plot visualize the number of unique and shared DEGs...
In HaojiaWu/plot1cell: A package for single cell data visualization
complex_upset_plot R Documentation
UpSet plot visualize the number of unique and shared DEGs across group
Description
This function takes Seurat object as input and visualize the genes that
are unique to a particular group or shared by multiple group.
Usage
complex_upset_plot(seu_obj, celltype, group, logfc = 0.5, min_size = 1)
Arguments
seu_obj
A complete Seurat object.
celltype
The cell type to analyze.
group
Group factor in meta data.
logfc
Log fold change to select the DEGs
min_size
Minimal number of observations in an intersection for it to be included
Value
An UpSet plot
HaojiaWu/plot1cell documentation built on Nov. 13, 2023, 9:20 a.m.
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| complex_upset_plot | R Documentation |
UpSet plot visualize the number of unique and shared DEGs across group
Description
This function takes Seurat object as input and visualize the genes that are unique to a particular group or shared by multiple group.
Usage
complex_upset_plot(seu_obj, celltype, group, logfc = 0.5, min_size = 1)
Arguments
seu_obj |
A complete Seurat object. |
celltype |
The cell type to analyze. |
group |
Group factor in meta data. |
logfc |
Log fold change to select the DEGs |
min_size |
Minimal number of observations in an intersection for it to be included |
Value
An UpSet plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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