extract_gene_count: A function to extract gene counts for ploting
In HaojiaWu/plot1cell: A package for single cell data visualization

extract_gene_count

R Documentation

A function to extract gene counts for ploting

Description

This function is a modified Seurat::FetchData function to extract gene counts and the associated meta data for ploting. It returns a dataframe with the requested information from the Seurat object.

Usage

extract_gene_count(
  seu_obj,
  features,
  cell.types = NULL,
  data.type = "data",
  meta.groups = NULL
)

Arguments

`seu_obj`	A finished Seurat Object with cell type annotation in the active.ident slot
`features`	Gene names to extract expression data
`cell.types`	The cell types to be inspected. By default, it will incorporate all cell types.
`data.type`	The data slot to be accessed. By default, the "data" slot will be used.
`meta.groups`	The colnames in the meta.data slot you want to include.