create_pyscenic_file: Generate the files required by pySCENIC
In HaojiaWu/plot1cell: A package for single cell data visualization
create_pyscenic_file R Documentation
Generate the files required by pySCENIC
Description
This function can generate the file used as input into pySCENIC analysis.
A loom file will be created.
Usage
create_pyscenic_file(seu_obj, celltypes, min.gene = 1)
Arguments
seu_obj
A complete Seurat object
celltypes
The cell types being selected for analysis
min.gene
Cutoff to filter the low expression genes
Value
A loom file
HaojiaWu/plot1cell documentation built on Nov. 13, 2023, 9:20 a.m.
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| create_pyscenic_file | R Documentation |
Generate the files required by pySCENIC
Description
This function can generate the file used as input into pySCENIC analysis. A loom file will be created.
Usage
create_pyscenic_file(seu_obj, celltypes, min.gene = 1)
Arguments
seu_obj |
A complete Seurat object |
celltypes |
The cell types being selected for analysis |
min.gene |
Cutoff to filter the low expression genes |
Value
A loom file
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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