get_metadata: Get metadata from a Seurat object
In HaojiaWu/plot1cell: A package for single cell data visualization
View source: R/plot_circlize.R
get_metadata R Documentation
Get metadata from a Seurat object
Description
This function extracts the metadata from a Seurat object and transforms the
UMAP/tSNE coordinates.
Usage
get_metadata(seu_obj, reductions = "umap", coord_scale = 0.8, color)
Arguments
seu_obj
SeuratObject
reductions
reductions methods, e.g."umap" or "tsne".
coord_scale
value from c(0,1) to adjust the UMAP/tSNE coordinates.
color
Colors assigned to the cell clusters
Value
A metadata dataframe
HaojiaWu/plot1cell documentation built on Nov. 13, 2023, 9:20 a.m.
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View source: R/plot_circlize.R
| get_metadata | R Documentation |
Get metadata from a Seurat object
Description
This function extracts the metadata from a Seurat object and transforms the UMAP/tSNE coordinates.
Usage
get_metadata(seu_obj, reductions = "umap", coord_scale = 0.8, color)
Arguments
seu_obj |
SeuratObject |
reductions |
reductions methods, e.g."umap" or "tsne". |
coord_scale |
value from c(0,1) to adjust the UMAP/tSNE coordinates. |
color |
Colors assigned to the cell clusters |
Value
A metadata dataframe
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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