plot_circlize: Generate a circlize plot outside the tSNE/UMAP

In HaojiaWu/plot1cell: A package for single cell data visualization

Generate a circlize plot outside the tSNE/UMAP

Description

This function generates a circlize plot outside the tSNE/UMAP

Usage

plot_circlize(
  data_plot,
  do.label = T,
  contour.levels = c(0.2, 0.3),
  pt.size = 0.5,
  kde2d.n = 1000,
  contour.nlevels = 100,
  bg.color = "#F9F2E4",
  col.use = NULL,
  label.cex = 0.5,
  repel = FALSE
)

Arguments

data_plot	Data frame prepared by the prepare_circlize_data function
do.label	Whether to label the clusters
contour.levels	Which contour line to be drawn on the plot. Value: 0-1
pt.size	Point size of the graph
kde2d.n	Number of grid points in each direction. A kde2d parameter
contour.nlevels	Total number of levels in contour
bg.color	Canvas background color
col.use	Colors used to label the cell type
label.cex	Label font size
repel	Whether or not to repel the cell type names on umap

Value

Return a circlize plot

HaojiaWu/plot1cell documentation built on Nov. 13, 2023, 9:20 a.m.