run_correlation: Compute and plot correlations between two datasets
In HaojiaWu/plot1cell: A package for single cell data visualization

run_correlation

R Documentation

Compute and plot correlations between two datasets

This function can compute the correlations on the samples from two count matrix. It will use Pearson method as default.

run_correlation(
  data1,
  data2,
  ngenes = 2000,
  method.use = "pearson",
  color.use = NULL
)

`data1`	The first data frame with genes in rows and samples in columns
`data2`	The second data frame with genes in rows and samples in columns
`ngenes`	Number of top variable genes used for the computation
`method.use`	Default is "pearson". Other methods include kendall" or "spearman". See ?cor.
`color.use`	Color palette for the heatmap plot.