complex_vlnplot_multiple: Violin plot for multiple genes across groups

In HaojiaWu/plot1cell: A package for single cell data visualization

Violin plot for multiple genes across groups

Description

This function generates violin plot(s) to compare the expression of multiple genes across different groups or cell types. It is designed for visualizing a complicated scenario: Gene expression of multiple genes on multiple cell types across groups.

Usage

complex_vlnplot_multiple(
  seu_obj,
  features,
  celltypes = NULL,
  group,
  add.dot = T,
  font.size = 12,
  pt.size = 0.1,
  alpha = 0.01,
  strip.color = NULL
)

Arguments

seu_obj	A complete Seurat object
features	Gene name. Only one gene is allowed.
celltypes	Cell types of interest. By default, all cell types are included.
group	Only one groupID is allowed.
add.dot	Whether or not to add points on the violins.
font.size	Font size for the labels.
pt.size	Point size for the data points on the violin
alpha	Point transparency. value from 0 to 1.
strip.color	Colors for the strip background

Value

A ggplot object

HaojiaWu/plot1cell documentation built on Nov. 13, 2023, 9:20 a.m.