complex_vlnplot_single: Violin plot for a single gene across groups
In HaojiaWu/plot1cell: A package for single cell data visualization

complex_vlnplot_single

R Documentation

Violin plot for a single gene across groups

Description

This function generates violin plot(s) to compare the expression of a single gene across different groups or cell types. It is designed for visualizing a complicated scenario: Gene expression on multiple cell types and multiple conditions.

Usage

complex_vlnplot_single(
  seu_obj,
  feature,
  celltypes = NULL,
  groups,
  add.dot = T,
  font.size = 14,
  pt.size = 0.1,
  splitby = NULL,
  alpha = 0.5,
  strip.color = NULL
)

Arguments

`seu_obj`	A complete Seurat object.
`feature`	Gene name. Only one gene is allowed.
`celltypes`	Cell types of interest. By default, all cell types are included.
`groups`	Groups selected for plotting. Support multiple groups.
`add.dot`	Whether or not to add points on the violins.
`font.size`	Font size for the labels.
`pt.size`	Point size for the data points on the violin.
`splitby`	Group to split the gene expression. Only works when length(groups)==1.
`alpha`	Point transparency. value from 0 to 1.
`strip.color`	Colors for the strip background.