API for HatsuneCode/TrustVDJ
Tools for Immune Repertoire Analysis

Global functions
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.Read10x_clonotype	Man page Source code
.Read10x_consensus	Man page Source code
.Read10x_contig	Man page Source code
.ReadAIRR	Man page Source code
.ReadTrust_BarcodeReport	Man page Source code
.ReadTrust_Report	Man page Source code
Circos	Man page Source code
CloneSize	Man page Source code
CloneSizeFisher	Man page Source code
ClonotypeFromDataframe	Man page Source code
ConsensusFromDataframe	Man page Source code
CreateVdjObject	Man page Source code
CreateVdjSample	Man page Source code
Download	Man page Source code
Fisher	Man page Source code
GroupCDR3byMotif	Man page Source code
Ifnone	Man page
Ifnull	Man page
Logo	Man page Source code
MergeClonotype	Man page Source code
MergeConsensus	Man page Source code
MergeVdjSamples	Man page Source code
NameVdjSample	Man page Source code
Pie	Man page Source code
Read10x	Man page Source code
ReadTrust	Man page Source code
RenameVdjSample	Man page Source code
Sankey	Man page Source code
TableCDR3	Man page Source code
TableVDJ	Man page Source code
TableVJab	Man page Source code
TableVJpair	Man page Source code
Trust	Man page
Trust-class	Man page
UniqueClonotype	Man page Source code
Upset	Man page Source code
VDJ	Man page
VDJ-class	Man page
VDJsample	Man page
VDJsample-class	Man page
`%\|\|%`	Source code
`%\|\|\|%`	Source code
addClonotype	Man page Source code
addConsensus	Man page Source code
appendFile	Man page Source code
build_Ensembl_reference	Man page Source code
build_IMGT_reference	Man page Source code
build_IgBlast_reference	Man page Source code
build_viruSite_reference	Man page Source code
cbinds	Man page Source code
checkDup	Man page Source code
checkIn	Man page Source code
checkName	Man page Source code
checkSub	Man page Source code
cloneAbundance	Man page Source code
cloneShanno	Man page Source code
cloneSimilar	Source code
cloneVenn	Source code
clonotype	Man page
clonotype-class	Man page
consensus	Man page
consensus-class	Man page
corTest	Man page Source code
df_chain	Man page Source code
distribute	Man page Source code
fetchCdr3	Man page Source code
fetchVDJ	Man page Source code
fetchVJab	Man page Source code
fetchVJpair	Man page Source code
filterFasta	Man page Source code
filterGtf	Man page Source code
findCDR3Motif	Man page Source code
findListName	Man page Source code
findMotif	Man page Source code
getCDS	Man page Source code
have	Man page Source code
htmlHref	Man page Source code
htmlText	Man page Source code
makePair	Man page Source code
makePct	Man page Source code
min_max	Man page Source code
none	Man page Source code
objSize	Man page Source code
pick	Man page Source code
rbinds	Man page Source code
sepInteger	Man page Source code
show,Trust-method	Man page
show,VDJ-method	Man page
show,VDJsample-method	Man page
show,clonotype-method	Man page
show,consensus-method	Man page
showCdr3Length	Source code
showClonotype	Source code
subsetCloneSize	Man page Source code
subsetClonotype	Man page Source code
subsetConsensus	Man page Source code
timer	Man page Source code
topClone	Man page Source code