dot-ReadAIRR: Read AIRR File.

In HatsuneCode/TrustVDJ: Tools for Immune Repertoire Analysis

Read AIRR File.

Description

.ReadAIRR reads an AIRR format file from TRUST4/cellranger results or somewhere else. It could be xx_airr.tsv or xx_barcode_airr.tsv generated by TRUST4 or airr_rearrangement.tsv generated by 10x cellranger (> 6.0). (.gz supported)

Usage

.ReadAIRR(airr_file = NULL, verbose = TRUE)

Arguments

airr_file	character. Path to AIRR file, eg. xx_airr.tsv or xx_barcode_airr.tsv.
verbose	logical. Print progress. Default is TRUE

Value

A VDJ information data.frame

Examples

airr_file = system.file('extdata', 'TRUST4_airr.tsv.gz', package = 'TrustVDJ')
airr = .ReadAIRR(airr_file = airr_file)
head(airr)

HatsuneCode/TrustVDJ documentation built on Aug. 13, 2022, 9:36 p.m.