getCDS: Get CDS Sequence from a Fasta file by GTF file

In HatsuneCode/TrustVDJ: Tools for Immune Repertoire Analysis

Get CDS Sequence from a Fasta file by GTF file

Description

Get CDS Sequence from a Fasta file by GTF file

Usage

getCDS(
  fa,
  gtf,
  cds.out = "cds.fa",
  pep.out = "pep.fa",
  init.codon = TRUE,
  verbose = TRUE
)

Arguments

fa	character. fasta(.gz) file path
gtf	character. gtf(.gz) file path
cds.out	character.
pep.out	character.
init.codon	logical.
verbose	logical.

Examples

print('waiting...')

HatsuneCode/TrustVDJ documentation built on Aug. 13, 2022, 9:36 p.m.