build_viruSite_reference: Build viruSite database reference

In HatsuneCode/TrustVDJ: Tools for Immune Repertoire Analysis

Build viruSite database reference

Description

Download reference sequences from the viruSite database and make genome and gene gtf.

Usage

build_viruSite_reference(
  outdir = NULL,
  method = NULL,
  ftp_method = NULL,
  verbose = TRUE
)

Arguments

outdir	character. Default getwd()
method	character. Method to be used for downloading html files, equal to download.file. Default 'libcurl'
ftp_method	character. Method to be used for downloading ftp files (.fa and .gtf), equal to download.file. Default 'curl'
verbose	logical. Default TRUE

Value

if success, return TRUE

Examples

build_viruSite_reference('viruSite')

HatsuneCode/TrustVDJ documentation built on Aug. 13, 2022, 9:36 p.m.