findCDR3Motif: Find CDR3 Motif in K-mer and Position

In HatsuneCode/TrustVDJ: Tools for Immune Repertoire Analysis

Find CDR3 Motif in K-mer and Position

Description

Find CDR3 Motif in K-mer and Position

Usage

findCDR3Motif(
  cdr3,
  kmers = NULL,
  position = NULL,
  min.freq = 3,
  save = TRUE,
  out.pref = NULL,
  verbose = TRUE
)

Arguments

cdr3	character.
kmers	numeric.
position	numeric.
min.freq	numeric.
save	logical.
out.pref	character.
verbose	logical.

Examples

CDR3  = TableCDR3(vdj, type = 'CDR3aa')
CDR3  = rep(CDR3$CDR3, CDR3$TotalCell)
Motif = findCDR3Motif(CDR3, 3, c(4, -3))
head(Motif) 

HatsuneCode/TrustVDJ documentation built on Aug. 13, 2022, 9:36 p.m.