corTest: Test for Correlation

In HatsuneCode/TrustVDJ: Tools for Immune Repertoire Analysis

Test for Correlation

Description

Correlation analysis for each row (each to each) between two data-frames.

Usage

corTest(x, y, method = "both", adj_method = "BH", rm0 = TRUE, verbose = TRUE)

Arguments

x	data.frame.
y	data.frame.
method	character. 'pearson', 'spearman' or 'both'. Default 'both'
adj_method	character. choose one method in p.adjust.methods. Default 'BH'
rm0	logical. whether remove 0 in each analyse. Default TRUE.
verbose	logical. Print progress. Default is TRUE

Value

a correlation results data.frame

Examples

treatment = data.frame(S1 = sample(10, 5), S2 = sample(10, 5), S3 = sample(10, 5))
control   = data.frame(S4 = sample(20, 5), S5 = sample(20, 5), S6 = sample(10, 5))
result    = corTest(treatment, control, method = 'pearson')
head(result)

HatsuneCode/TrustVDJ documentation built on Aug. 13, 2022, 9:36 p.m.