dot-ReadTrust_BarcodeReport: Read TRUST4 Barcode_report File.
In HatsuneCode/TrustVDJ: Tools for Immune Repertoire Analysis

.ReadTrust_BarcodeReport

R Documentation

Read TRUST4 Barcode_report File.

Description

.ReadTrust_BarcodeReport reads a barcode_report file generated by TRUST4. Note that it could be xx_barcode_report.tsv but not xx_report.tsv. (.gz supported)

Usage

.ReadTrust_BarcodeReport(barcode_report_file = NULL, verbose = TRUE)

Arguments

`barcode_report_file`	character. Path to barcode_report file generated by TRUST4.
`verbose`	logical. Print progress. Default is TRUE

Value

A VDJ information data.frame

Examples


barcode_report_file = system.file('extdata', 'TRUST4_barcode_report.tsv.gz', package = 'TrustVDJ')
barcode_report      = .ReadTrust_BarcodeReport(barcode_report_file)
head(barcode_report)

HatsuneCode/TrustVDJ documentation built on Aug. 13, 2022, 9:36 p.m.