Files in HatsuneCode/TrustVDJ
Tools for Immune Repertoire Analysis
.Rbuildignore
.gitignore
CRAN-SUBMISSION
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/buildReference.r
R/class.r
R/cloneSize.r
R/consenSize.r
R/constants.r
R/download.r
R/file.r
R/filter.r
R/html.r
R/object.r
R/plot.r
R/read10x.r
R/readTrust.r
R/sequence.r
R/test.r
R/utils.r
README.Rmd
README.md
cran-comments.md
inst/extdata/10x_airr_rearrangement.tsv.gz
inst/extdata/10x_all_contig_annotations.csv.gz
inst/extdata/10x_clonotypes.csv.gz
inst/extdata/10x_consensus_annotations.csv.gz
inst/extdata/10x_filtered_contig_annotations.csv.gz
inst/extdata/CMV.virus.tsv.gz
inst/extdata/COVID-19.virus.tsv.gz
inst/extdata/EBV.virus.tsv.gz
inst/extdata/GSM5160417_P1_TCR_filtered_contig_annotations.csv.gz
inst/extdata/GSM5160420_P2_TCR_filtered_contig_annotations.csv.gz
inst/extdata/GSM5160422_P3_TCR_filtered_contig_annotations.csv.gz
inst/extdata/GSM5160424_P4_TCR_filtered_contig_annotations.csv.gz
inst/extdata/GSM5160427_P5_TCR_filtered_contig_annotations.csv.gz
inst/extdata/GSM5160430_P6_TCR_filtered_contig_annotations.csv.gz
inst/extdata/GSM5160432_H1_TCR_filtered_contig_annotations.csv.gz
inst/extdata/GSM5160434_H2_TCR_filtered_contig_annotations.csv.gz
inst/extdata/GSM5160435_H3_TCR_filtered_contig_annotations.csv.gz
inst/extdata/HSV-2.virus.tsv.gz
inst/extdata/IMGT_Homo_sapiens.fa.gz
inst/extdata/IMGT_Homo_sapiens.gtf.gz
inst/extdata/InfluenzaA.virus.tsv.gz
inst/extdata/TRUST4_airr.tsv.gz
inst/extdata/TRUST4_barcode_airr.tsv.gz
inst/extdata/TRUST4_barcode_report.tsv.gz
inst/extdata/TRUST4_report.tsv.gz
man/Circos.Rd
man/CloneSize.Rd
man/CloneSizeFisher.Rd
man/ClonotypeFromDataframe.Rd
man/ConsensusFromDataframe.Rd
man/CreateVdjObject.Rd
man/CreateVdjSample.Rd
man/Download.Rd
man/Fisher.Rd
man/GroupCDR3byMotif.Rd
man/Ifnone.Rd
man/Ifnull.Rd
man/Logo.Rd
man/MergeClonotype.Rd
man/MergeConsensus.Rd
man/MergeVdjSamples.Rd
man/NameVdjSample.Rd
man/Pie.Rd
man/Read10x.Rd
man/ReadTrust.Rd
man/RenameVdjSample.Rd
man/Sankey.Rd
man/TableCDR3.Rd
man/TableVDJ.Rd
man/TableVJab.Rd
man/TableVJpair.Rd
man/Trust-class.Rd
man/UniqueClonotype.Rd
man/Upset.Rd
man/VDJ-class.Rd
man/VDJsample-class.Rd
man/addClonotype.Rd
man/addConsensus.Rd
man/appendFile.Rd
man/build_Ensembl_reference.Rd
man/build_IMGT_reference.Rd
man/build_IgBlast_reference.Rd
man/build_viruSite_reference.Rd
man/cbinds.Rd
man/checkDup.Rd
man/checkIn.Rd
man/checkName.Rd
man/checkSub.Rd
man/cloneAbundance.Rd
man/cloneShanno.Rd
man/clonotype-class.Rd
man/consensus-class.Rd
man/corTest.Rd
man/df_chain.Rd
man/distribute.Rd
man/dot-Read10x_clonotype.Rd
man/dot-Read10x_consensus.Rd
man/dot-Read10x_contig.Rd
man/dot-ReadAIRR.Rd
man/dot-ReadTrust_BarcodeReport.Rd
man/dot-ReadTrust_Report.Rd
man/fetchCdr3.Rd
man/fetchVDJ.Rd
man/fetchVJab.Rd
man/fetchVJpair.Rd
man/filterFasta.Rd
man/filterGtf.Rd
man/findCDR3Motif.Rd
man/findListName.Rd
man/findMotif.Rd
man/getCDS.Rd
man/have.Rd
man/htmlHref.Rd
man/htmlText.Rd
man/makePair.Rd
man/makePct.Rd
man/min_max.Rd
man/none.Rd
man/objSize.Rd
man/pick.Rd
man/rbinds.Rd
man/sepInteger.Rd
man/show-Trust-method.Rd
man/show-VDJ-method.Rd
man/show-VDJsample-method.Rd
man/show-clonotype-method.Rd
man/show-consensus-method.Rd
man/subsetCloneSize.Rd
man/subsetClonotype.Rd
man/subsetConsensus.Rd
man/timer.Rd
man/topClone.Rd
