Files in HenryWard/orthrus
Scoring Combinatorial CRISPR Screens
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/data.R
R/load.R
R/plot.R
R/score.R
R/score_inner.R
R/sysdata.rda
R/utils.R
README.md
data/chymera_batch_table.RData
data/chymera_paralog.RData
data/chymera_sample_table.RData
man/add_screen.Rd
man/add_screens_from_table.Rd
man/call_combn_hits.Rd
man/call_condition_hits.Rd
man/check_screen_params.Rd
man/chymera_batch_table.Rd
man/chymera_paralog.Rd
man/chymera_sample_table.Rd
man/essential_lfc_qc.Rd
man/filter_reads.Rd
man/load_batch_table.Rd
man/normalize_reads.Rd
man/normalize_screens.Rd
man/orthrus_wrapper.Rd
man/plot_combn_gene_residuals.Rd
man/plot_combn_residuals.Rd
man/plot_combn_response.Rd
man/plot_condition_gene_residuals.Rd
man/plot_condition_residuals.Rd
man/plot_condition_response.Rd
man/plot_heatmap.Rd
man/plot_lfc_qc.Rd
man/plot_reads.Rd
man/plot_reads_qc.Rd
man/plot_samples.Rd
man/remove_screen.Rd
man/retrieve_guides_by_gene.Rd
man/retrieve_guides_by_label.Rd
man/score_combn_batch.Rd
man/score_combn_vs_single.Rd
man/score_conditions_batch.Rd
man/score_conditions_vs_control.Rd
man/split_guides.Rd
man/split_guides_by_type.Rd
man/unique_gene_pairs.Rd
tests/testthat.R
tests/testthat/test_loading.R
tests/testthat/test_scoring_inner.R
tests/testthat/test_screens.R
vignettes/.gitignore
vignettes/orthrus-vignette.Rmd
vignettes/orthrus-vignette.html
