load_batch_table: Checks a batch scoring file

In HenryWard/orthrus: Scoring Combinatorial CRISPR Screens

Checks a batch scoring file

Description

Checks to make sure that the contents of the .tsv file and its formats are appropriate for running batch scoring functions. The batch table can be either a path to a .tsv file or a dataframe with the columns mentioned below.

Usage

load_batch_table(batch_table, screens)

Arguments

batch_table	Either a dataframe or a path to .tsv file mapping screens to their controls for scoring, with two columns for "Screen" and "Control." Screens to score against derived null-models with the combn scoring mode must have their respective control labeled as "combn."
screens	A screens object created with add_screens_from_table.

Value

A dataframe with Screen and Control columns.

HenryWard/orthrus documentation built on June 2, 2023, 10:28 p.m.