normalize_reads: Log-normalizes reads.
In HenryWard/orthrus: Scoring Combinatorial CRISPR Screens
normalize_reads R Documentation
Log-normalizes reads.
Description
Log2-normalizes reads with a given pseudocount and scaling factor, and also
depth-normalizes the data.
Usage
normalize_reads(df, scaling_factor = 1e+06, pseudocount = 1)
Arguments
df
List of read counts.
scaling_factor
Scaling factor (default 1e6).
pseudocount
Pseudocount (default 1).
Value
Log- and depth-normalized read counts.
HenryWard/orthrus documentation built on June 2, 2023, 10:28 p.m.
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| normalize_reads | R Documentation |
Log-normalizes reads.
Description
Log2-normalizes reads with a given pseudocount and scaling factor, and also depth-normalizes the data.
Usage
normalize_reads(df, scaling_factor = 1e+06, pseudocount = 1)
Arguments
df |
List of read counts. |
scaling_factor |
Scaling factor (default 1e6). |
pseudocount |
Pseudocount (default 1). |
Value
Log- and depth-normalized read counts.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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