split_guides: Splits data into different types of guides

In HenryWard/orthrus: Scoring Combinatorial CRISPR Screens

Splits data into different types of guides

Description

Splits data into different types of guides

Usage

split_guides(guides, screens, id_col1 = NULL, id_col2 = NULL)

Arguments

guides	Dataframe returned from retrieve_guides_by_gene.
screens	List of screens generated with add_screens.
id_col1	A column containing guide-specific indices, e.g. guide sequences or IDs, for guides in the gene1 column (optional, default NULL).
id_col2	A column containing guide-specific indices, e.g. guide sequences or IDs, for guides in the gene1 column (optional, default NULL).

Value

A list of several separate guide lists. Combinatorial-targeting guides are stored in the key "combn", dual-targeting guides are stored in the key "dual", single-targeting guides are stored in the key "single" and guides which target two control genes are stored in the key "control".

HenryWard/orthrus documentation built on June 2, 2023, 10:28 p.m.