plot_lfc_qc: Plot replicate comparisons.

View source: R/plot.R

plot_lfc_qcR Documentation

Plot replicate comparisons.

Description

Plots replicate comparisons for all replicates in a list of screens and outputs plots to a given folder.

Usage

plot_lfc_qc(
  df,
  screens,
  output_folder,
  negative_controls = NULL,
  control_label = "Negative controls",
  plot_type = "png",
  display_numbers = TRUE
)

Arguments

df

Reads or lfc dataframe.

screens

List of screens created with add_screens.

output_folder

Folder to output plots to.

negative_controls

List of negative control genes to append to default list of non-essential genes (default NULL).

control_label

Label for negative control genes in plot (default "Negative controls").

plot_type

Type of plot to output, one of "png" or "pdf" (default "png").

display_numbers

Whether or not to include PCC values in heatmap (default TRUE).


HenryWard/orthrus documentation built on June 2, 2023, 10:28 p.m.