plot_lfc_qc | R Documentation |
Plots replicate comparisons for all replicates in a list of screens and outputs plots to a given folder.
plot_lfc_qc(
df,
screens,
output_folder,
negative_controls = NULL,
control_label = "Negative controls",
plot_type = "png",
display_numbers = TRUE
)
df |
Reads or lfc dataframe. |
screens |
List of screens created with |
output_folder |
Folder to output plots to. |
negative_controls |
List of negative control genes to append to default list of non-essential genes (default NULL). |
control_label |
Label for negative control genes in plot (default "Negative controls"). |
plot_type |
Type of plot to output, one of "png" or "pdf" (default "png"). |
display_numbers |
Whether or not to include PCC values in heatmap (default TRUE). |
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