filter_reads: Filters guides with too few read counts.

In HenryWard/orthrus: Scoring Combinatorial CRISPR Screens

Filters guides with too few read counts.

Description

Filters guides out with too few read counts from a given reads dataframe and a given set of columns (e.g. T0 columns).

Usage

filter_reads(df, cols, min_reads = 30, max_reads = 10000)

Arguments

df	Reads dataframe.
cols	Columns to filter by.
min_reads	Minimum number of reads to keep (anything below this value will be filtered out).
max_reads	Maximum number of reads to keep (anything above this value will be filtered out).

Value

Filtered dataframe.

HenryWard/orthrus documentation built on June 2, 2023, 10:28 p.m.