Dmel2PPMAPK: The interaction data of the main screen

In Huber-group-EMBL/RNAinteractMAPK: Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi

Description

Dmel2PPMAPK is an object of class RNAinteract. It contains the raw data, the computed main effects, pairwise interaction scores, p-values and q-values computed by a t-test. The package vignette vontains the complete code and documentation for the statistical analysis.

Usage

data(Dmel2PPMAPK)

Format

An object of class RNAinteract.

Source

Horn, Sandmann, Fischer, Huber, Boutros, Mapping of Signalling Networks through Synthetic Genetic Interaction Analysis by RNAi, Nature Methods, 2011, main interaction screen.

Examples

data(Dmel2PPMAPK)
Dmel2PPMAPK

# Obtain the pairwise interaction matrix
PI <- getData(Dmel2PPMAPK, type="pi", format="targetMatrix", 
              screen="mean", withoutgroups = c("pos", "neg"))

Huber-group-EMBL/RNAinteractMAPK documentation built on Dec. 31, 2020, 1:01 p.m.