API for IFIproteomics/LFQbench
Label Free Quantitation benchmark package
| Global functions | |
|---|---|
| FSWE.addModification | Man page Source code |
| FSWE.addSoftwareConfiguration | Man page Source code |
| FSWE.generateReports | Man page Source code |
| FSWE.init.defaultModifications | Source code |
| FSWE.init.defaultSoftwares | Man page Source code |
| FSWE.initConfiguration | Man page Source code |
| FSWE.listModifications | Man page Source code |
| FSWE.postprocessSoftwareConfiguration | Source code |
| FSWE.scaleIntensities | Man page Source code |
| FSWE.setDatasetInjectionNames | Man page Source code |
| FSWE.setSoftwareConfiguration | Source code |
| FSWE.setSpeciesTags | Man page Source code |
| FSWE.simExperiment | Man page Source code |
| FSWE.switchSoftwareConfiguration | Man page Source code |
| LFQbench.batchProcessFiles | Man page Source code |
| LFQbench.batchProcessRootFolder | Man page Source code |
| LFQbench.changeConfiguration | Man page Source code |
| LFQbench.explainMetrics | Man page Source code |
| LFQbench.getMetrics | Man page Source code |
| LFQbench.initConfiguration | Man page Source code |
| LFQbench.plotProteinDispersionBySample | Man page |
| LFQbench.plotProteinDispersionBySpecies | Man page |
| LFQbench.plotResultSet | Man page Source code |
| LFQbench.plotSampleComposition | Man page |
| LFQbench.plotSpeciesLegends | Man page Source code |
| LFQbench.plotToFile | Man page Source code |
| LFQbench.processConfig | Man page Source code |
| LFQbench.processDocSet | Man page Source code |
| LFQbench.processFile | Man page Source code |
| LFQbench.setDataRootFolder | Man page Source code |
| LFQbench.showAllSpeciesQC | Man page |
| LFQbench.showDistributionDensityPlot | Man page |
| LFQbench.showLogRatioBoxPlot | Man page |
| LFQbench.showMetrics | Man page Source code |
| LFQbench.showQuantBarPlot | Man page |
| LFQbench.showScatterAndBoxPlot | Man page |
| LFQbench.showScatterAndDensityPlot | Man page |
| LFQbench.showScatterPlot | Man page |
| LFQbench.showSingleSpeciesQC | Man page |
| addAxes | Man page Source code |
| addScatterPointsForSpecies | Source code |
| addScatterPointsForSpecies2 | Source code |
| addXLab | Man page Source code |
| addYLab | Man page Source code |
| auc | Man page |
| avgNA | Man page Source code |
| avg_top_n | Man page Source code |
| createNumericPairs | Man page Source code |
| emptyPlot | Man page Source code |
| evalCommandLineArguments | Man page Source code |
| expandRange | Man page Source code |
| fixFileExt | Man page Source code |
| getCombinedLogRatios | Man page Source code |
| getCombinedProteinRSDs | Man page Source code |
| getFileExt | Man page Source code |
| getOutlierIdx | Man page Source code |
| getPeptideIntensities | Source code |
| getPeptideKeys | Source code |
| getProteinKeys | Source code |
| getQCFunction | Source code Source code |
| getQuantileAccuracy | Man page Source code |
| getQuantilePrecision | Man page Source code |
| getQuantileSeparation | Man page Source code |
| getRangedAccuracy | Man page Source code |
| getRangedPrecision | Man page Source code |
| getRangedSepRate | Man page Source code |
| getSepRate | Man page Source code |
| guessExperiment | Source code |
| guessExperiment_wide | Source code |
| guessInjection | Source code |
| guessOrganism | Man page Source code |
| guessSep | Man page Source code |
| guessSoftwareSource | Man page Source code |
| hLine | Source code |
| loadLibrary | Man page Source code |
| logIdStatistics | Man page Source code |
| makeDocSet | Man page Source code |
| makeEverythingInOneFolderDocSet | Man page Source code |
| makeScatter | Man page Source code |
| median_all | Man page Source code |
| median_quench | Man page Source code |
| mkdir | Man page Source code |
| moveFiles | Man page Source code |
| plotSpeciesLegend | Man page Source code |
| qboxplot | Man page Source code |
| rms | Man page Source code |
| saveIDs | Man page Source code |
| saveLogRatios | Man page Source code |
| saveMetrics | Man page Source code |
| saveSampleCVs | Man page Source code |
| saveSampleMeans | Man page Source code |
| saveSpeciesSeparation | Man page Source code |
| scaleColor | Source code |
| scaleTo01 | Source code |
| single_hits | Man page Source code |
| spiner | Man page Source code |
| stopHere | Man page Source code |
| sumNA | Man page Source code |
| sum_top_n | Man page Source code |
| take1stentry | Man page Source code |
| vLine | Source code |
