determineMutationalBurden: Determine the mutational burden of the CPCT-02/HMF samples.

Description Usage Arguments Value Examples

View source: R/analysisWGS_determineMutationalBurden.R

Description

Determine the mutational burden of the CPCT-02/HMF samples.

Usage

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determineMutationalBurden(data.Cohort, minTAF.Muts = 0, minTAF.SV = 0)

Arguments

data.Cohort

(list): Results of the importWGSOfCohort function.

minTAF.Muts

(double): Min. TAF for SNV, InDel, MNV in order to count.

minTAF.SV

(double): Min. TAF for structural variants in order to count.

Value

(tibble) Returns a tibble of the dNdS results.

Examples

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 data.Cohort <- R2CPCT::importWGSOfCohort(<cpctIds>, <combinedData>)
 determineMutationalBurden(data.Cohort)

J0bbie/R2CPCT documentation built on Feb. 24, 2022, 8:15 a.m.