determineMutationalBurden: Determine the mutational burden of the CPCT-02/HMF samples.

In J0bbie/R2CPCT: Misc. functions to perform import and analysis of WGS and RNA-Seq samples

Description

Determine the mutational burden of the CPCT-02/HMF samples.

Usage

determineMutationalBurden(data.Cohort, minTAF.Muts = 0, minTAF.SV = 0)

Arguments

data.Cohort	(list): Results of the importWGSOfCohort function.
minTAF.Muts	(double): Min. TAF for SNV, InDel, MNV in order to count.
minTAF.SV	(double): Min. TAF for structural variants in order to count.

Value

(tibble) Returns a tibble of the dNdS results.

Examples

 data.Cohort <- R2CPCT::importWGSOfCohort(<cpctIds>, <combinedData>)
 determineMutationalBurden(data.Cohort)

J0bbie/R2CPCT documentation built on Feb. 24, 2022, 8:15 a.m.