importLINXFusions: Import detected fusions by LINX.
In J0bbie/R2CPCT: Misc. functions to perform import and analysis of WGS and RNA-Seq samples
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/import_LINXFusions.R
Description
Import detected fusions by LINX.
Usage
1
importLINXFusions(pathFusions)
Arguments
pathFusions
(character): Path to the <sample>.linx.fusion.tsv file containing predicted fusions.
Value
(tibble) Tibble containing the predicted WGS fusions of the sample.
Author(s)
Job van Riet j.vanriet@erasmusmc.nl
See Also
Other CPCT:
detectKataegis_OLD(),
findCPCTCenter(),
importPurityStatsPURPLE(),
importSomaticCopynumberPURPLE(),
importSomaticVariantsVEP(),
importStructuralVariantsPURPLE(),
importWGSOfCohort(),
importWGSOfSample(),
importdriverCatalogHMF(),
performCHORD(),
performShatterSeek()
Examples
1
importLINXFusions(pathFusions = '<sample>.linx.fusion.tsv')
J0bbie/R2CPCT documentation built on Feb. 24, 2022, 8:15 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
View source: R/import_LINXFusions.R
Description
Import detected fusions by LINX.
Usage
1 | importLINXFusions(pathFusions)
|
Arguments
pathFusions |
(character): Path to the <sample>.linx.fusion.tsv file containing predicted fusions. |
Value
(tibble) Tibble containing the predicted WGS fusions of the sample.
Author(s)
Job van Riet j.vanriet@erasmusmc.nl
See Also
Other CPCT:
detectKataegis_OLD(),
findCPCTCenter(),
importPurityStatsPURPLE(),
importSomaticCopynumberPURPLE(),
importSomaticVariantsVEP(),
importStructuralVariantsPURPLE(),
importWGSOfCohort(),
importWGSOfSample(),
importdriverCatalogHMF(),
performCHORD(),
performShatterSeek()
Examples
1 | importLINXFusions(pathFusions = '<sample>.linx.fusion.tsv')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.