performCHORD: Performs CHORD analysis.

In J0bbie/R2CPCT: Misc. functions to perform import and analysis of WGS and RNA-Seq samples

Description

Performs CHORD analysis.

Usage

performCHORD(somaticVariants, structuralVariants)

Arguments

somaticVariants	(VRanges): VRanges of a single sample from importSomaticVariantsVEP.
structuralVariants	(GRanges): GRanges of a single sample from importStructuralVariantsPURPLE.

Value

(list) list with the CHORD contexts and results.

Author(s)

Job van Riet [e-mail]

See Also

Other CPCT: detectKataegis_OLD(), findCPCTCenter(), importLINXFusions(), importPurityStatsPURPLE(), importSomaticCopynumberPURPLE(), importSomaticVariantsVEP(), importStructuralVariantsPURPLE(), importWGSOfCohort(), importWGSOfSample(), importdriverCatalogHMF(), performShatterSeek()

Examples

	runCHORD(dataSample$somaticVariants, dataSample$structuralVariants)

J0bbie/R2CPCT documentation built on Feb. 24, 2022, 8:15 a.m.