makeOncoplot.CPCT: Generates a mutational signature plot.

In J0bbie/R2CPCT: Misc. functions to perform import and analysis of WGS and RNA-Seq samples

Description

Generates a mutational signature plot.

Usage

makeOncoplot.CPCT(
  dataOncoplot,
  includedSamples = NULL,
  sortSamples = NULL,
  sortGenes = NULL,
  showAlleles = TRUE
)

Arguments

dataOncoplot	(tibble): Mutational data from the combinedReport.
includedSamples	(character): Which samples should be included (completes missing samples)?
sortSamples	(character): Specific order of samples ordering (x-axis)?
sortGenes	(character): Specific order of genes (y-axis)?
showAlleles	(logical): Should the mutations be (roughly) separated per paternal/maternal allele (TRUE) or combined (FALSE).

Value

(ggplot) ggplot object.

J0bbie/R2CPCT documentation built on Feb. 24, 2022, 8:15 a.m.