performShatterSeek: Performs ShatterSeek analysis.
In J0bbie/R2CPCT: Misc. functions to perform import and analysis of WGS and RNA-Seq samples
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/import_performShatterSeek.R
Description
Performs ShatterSeek analysis.
Usage
1
performShatterSeek(copyNumbers, structuralVariants)
Arguments
copyNumbers
(GRanges): VRanges of a single sample from importSomaticVariantsVEP.
structuralVariants
(GRanges): GRanges of a single sample from importStructuralVariantsPURPLE.
Value
(list) Tibble with the CHORD results.
Author(s)
Job van Riet j.vanriet@erasmusmc.nl
See Also
Other CPCT:
detectKataegis_OLD(),
findCPCTCenter(),
importLINXFusions(),
importPurityStatsPURPLE(),
importSomaticCopynumberPURPLE(),
importSomaticVariantsVEP(),
importStructuralVariantsPURPLE(),
importWGSOfCohort(),
importWGSOfSample(),
importdriverCatalogHMF(),
performCHORD()
Examples
1
runCHORD(dataSample$somaticVariants, dataSample$structuralVariants)
J0bbie/R2CPCT documentation built on Feb. 24, 2022, 8:15 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/import_performShatterSeek.R
Description
Performs ShatterSeek analysis.
Usage
1 | performShatterSeek(copyNumbers, structuralVariants)
|
Arguments
copyNumbers |
(GRanges): VRanges of a single sample from importSomaticVariantsVEP. |
structuralVariants |
(GRanges): GRanges of a single sample from importStructuralVariantsPURPLE. |
Value
(list) Tibble with the CHORD results.
Author(s)
Job van Riet j.vanriet@erasmusmc.nl
See Also
Other CPCT:
detectKataegis_OLD(),
findCPCTCenter(),
importLINXFusions(),
importPurityStatsPURPLE(),
importSomaticCopynumberPURPLE(),
importSomaticVariantsVEP(),
importStructuralVariantsPURPLE(),
importWGSOfCohort(),
importWGSOfSample(),
importdriverCatalogHMF(),
performCHORD()
Examples
1 | runCHORD(dataSample$somaticVariants, dataSample$structuralVariants)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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